diffupy
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Contents:
Installation
First Steps
Command Line Interface
Kernel
Diffusion
Constants
Matrix
diffupy
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Index
Symbols
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A
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B
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C
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D
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E
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F
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G
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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X
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Z
Symbols
--absolute_value <absolute_value>
diffupy-diffuse command line option
--binarize <binarize>
diffupy-diffuse command line option
--input <input>
diffupy-diffuse command line option
--log
diffupy-kernel command line option
--method <method>
diffupy-diffuse command line option
--network <network>
diffupy-diffuse command line option
diffupy-kernel command line option
--output <output>
diffupy-diffuse command line option
diffupy-kernel command line option
--output_format <output_format>
diffupy-diffuse command line option
--p_value <p_value>
diffupy-diffuse command line option
--threshold <threshold>
diffupy-diffuse command line option
-a
diffupy-diffuse command line option
-b
diffupy-diffuse command line option
-f
diffupy-diffuse command line option
-i
diffupy-diffuse command line option
-l
diffupy-kernel command line option
-m
diffupy-diffuse command line option
-n
diffupy-diffuse command line option
diffupy-kernel command line option
-o
diffupy-diffuse command line option
diffupy-kernel command line option
-p
diffupy-diffuse command line option
-t
diffupy-diffuse command line option
A
ABSOLUTE_VALUE_EXP (in module diffupy.constants)
B
BEL (in module diffupy.constants)
BER_P (in module diffupy.constants)
BER_S (in module diffupy.constants)
C
col_bind() (diffupy.matrix.Matrix method)
cols_idx_scores_mapping() (diffupy.matrix.Matrix property)
cols_labels() (diffupy.matrix.Matrix property)
cols_labels_ix_mapping() (diffupy.matrix.Matrix property)
compute_time_kernel() (in module diffupy.kernels)
CSV (in module diffupy.constants)
D
DEFAULT_DIFFUPY_DIR (in module diffupy.constants)
delete_col_from_label() (diffupy.matrix.Matrix method)
delete_row_from_label() (diffupy.matrix.Matrix method)
diffupy-diffuse command line option
--absolute_value <absolute_value>
--binarize <binarize>
--input <input>
--method <method>
--network <network>
--output <output>
--output_format <output_format>
--p_value <p_value>
--threshold <threshold>
-a
-b
-f
-i
-m
-n
-o
-p
-t
diffupy-kernel command line option
--log
--network <network>
--output <output>
-l
-n
-o
diffupy.constants
module
diffupy.diffuse
module
diffupy.diffuse_raw
module
diffupy.kernels
module
diffupy.matrix
module
diffuse() (in module diffupy.diffuse)
diffuse_raw() (in module diffupy.diffuse_raw)
diffusion_kernel() (in module diffupy.kernels)
E
EDGE_LIST (in module diffupy.constants)
EMOJI (in module diffupy.constants)
ensure_output_dirs() (in module diffupy.constants)
F
FORMAT_SEPARATOR_MAPPING (in module diffupy.constants)
G
get_cell_from_labels() (diffupy.matrix.Matrix method)
get_col_from_label() (diffupy.matrix.Matrix method)
get_row_from_label() (diffupy.matrix.Matrix method)
GM (in module diffupy.constants)
GML (in module diffupy.constants)
GRAPH_FORMATS (in module diffupy.constants)
GRAPHML (in module diffupy.constants)
I
inverse_cosine_kernel() (in module diffupy.kernels)
J
JSON (in module diffupy.constants)
K
KERNEL_FORMATS (in module diffupy.constants)
L
LaplacianMatrix (class in diffupy.matrix)
LOG_FC (in module diffupy.constants)
M
match_cols() (diffupy.matrix.Matrix method)
match_delete_rows() (diffupy.matrix.Matrix method)
match_mat() (diffupy.matrix.Matrix method)
match_missing_cols() (diffupy.matrix.Matrix method)
match_missing_rows() (diffupy.matrix.Matrix method)
match_rows() (diffupy.matrix.Matrix method)
Matrix (class in diffupy.matrix)
MC (in module diffupy.constants)
METHODS (in module diffupy.constants)
ML (in module diffupy.constants)
module
diffupy.constants
diffupy.diffuse
diffupy.diffuse_raw
diffupy.kernels
diffupy.matrix
N
NODE (in module diffupy.constants)
NODE_TYPE (in module diffupy.constants)
O
order_rows() (diffupy.matrix.Matrix method)
OUTPUT (in module diffupy.constants)
P
p_step_kernel() (in module diffupy.kernels)
P_VALUE (in module diffupy.constants)
PICKLE (in module diffupy.constants)
R
RAW (in module diffupy.constants)
regularised_laplacian_kernel() (in module diffupy.kernels)
RELATION (in module diffupy.constants)
row_bind() (diffupy.matrix.Matrix method)
rows_idx_scores_mapping() (diffupy.matrix.Matrix property)
rows_labels_ix_mapping() (diffupy.matrix.Matrix property)
S
SCORE (in module diffupy.constants)
set_cell_from_labels() (diffupy.matrix.Matrix method)
set_row_from_label() (diffupy.matrix.Matrix method)
SOURCE (in module diffupy.constants)
T
TARGET (in module diffupy.constants)
THRESHOLD (in module diffupy.constants)
to_csv() (diffupy.matrix.Matrix method)
to_df() (diffupy.matrix.Matrix method)
to_dict() (diffupy.matrix.Matrix method)
to_nx_graph() (diffupy.matrix.Matrix method)
TSV (in module diffupy.constants)
U
update_ix_mappings() (diffupy.matrix.Matrix method)
V
validate_labels() (diffupy.matrix.Matrix method)
validate_labels_and_update_ix_mappings() (diffupy.matrix.Matrix method)
X
XLS (in module diffupy.constants)
XLSX (in module diffupy.constants)
Z
Z (in module diffupy.constants)
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